Capsella orientalis Dataset

Overview

The Capsella orientalis dataset page summarizes genome, annotation, and comparative resources for CapBase. Metadata will be refined as the release matures.

Open C. orientalis JBrowse Download data

Genome Assembly

Assembly placeholder: C. orientalis RAM v1.1. Genome FASTA and indexes are prepared for static JBrowse access.

Gene Annotation

Gene annotation placeholder: exon annotation v3.2 is available as indexed GFF3 for browser display.

TE Annotation

TE annotation placeholder: all TE annotation v3.2 and TE subtype tracks are prepared as indexed GFF3 files.

Ortholog Resources

Ortholog tables will be added later for comparisons across Capsella species and Arabidopsis thaliana.

Example Gene IDs

Example gene identifiers will be added after the public annotation naming scheme is finalized.

Genome Browser

The static JBrowse page uses indexed FASTA and GFF3 files served directly by CapBase.

Downloads

Download links will be added to the main Download page as data releases are finalized.

Data Version

Current placeholder version: RAM v1.1 assembly, gene annotation v3.2, TE annotation v3.2.

Citation

Citation information will be added later.